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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0006s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YC | ||||||||
Protein Properties | Length: 221aa MW: 24111.2 Da PI: 5.2521 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 179.2 | 3.8e-56 | 38 | 142 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l+skacelfilelt+rswlhaeenkrrtl+k+diaaa+trtd Kaladp0006s0050.1.p 38 QLQMFWAYQrqeIEQVSDFKNHQLPLARIKKIMKADEDVRMISAEAPILFSKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTD 127 89****9998899***************************************************************************** PP NF-YC 88 ifdflvdivprdelk 102 ifdflvdivprde+k Kaladp0006s0050.1.p 128 IFDFLVDIVPRDEIK 142 ************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.35E-34 | 11 | 132 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 5.1E-37 | 52 | 124 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-20 | 60 | 123 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MDSHHQQQQV GQQPPPPAPG VGAPAPFHHQ LQQQQQQQLQ MFWAYQRQEI EQVSDFKNHQ 60 LPLARIKKIM KADEDVRMIS AEAPILFSKA CELFILELTI RSWLHAEENK RRTLQKNDIA 120 AAITRTDIFD FLVDIVPRDE IKEEVGIAGL VGGTVPFYYP AMGQPAGMMM GRPVGDPAGG 180 GYLAPPSQAW QSVWQTAGAD EGAYGSGGGN GGPQQGNVDG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g92_C | 1e-43 | 21 | 138 | 1 | 119 | HapE |
4g91_C | 1e-43 | 21 | 138 | 1 | 119 | HapE |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 116 | RRTLQKN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012467975.1 | 1e-104 | PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 | ||||
Swissprot | Q9FMV5 | 7e-92 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A0D2LVC8 | 1e-104 | A0A0D2LVC8_G | ||||
STRING | GLYMA06G17780.1 | 4e-98 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 5e-81 | nuclear factor Y, subunit C4 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0006s0050.1.p |