PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0006s0050.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YC
Protein Properties Length: 221aa    MW: 24111.2 Da    PI: 5.2521
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0006s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC179.23.8e-56381421102
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaP+l+skacelfilelt+rswlhaeenkrrtl+k+diaaa+trtd
  Kaladp0006s0050.1.p  38 QLQMFWAYQrqeIEQVSDFKNHQLPLARIKKIMKADEDVRMISAEAPILFSKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTD 127
                          89****9998899***************************************************************************** PP

                NF-YC  88 ifdflvdivprdelk 102
                          ifdflvdivprde+k
  Kaladp0006s0050.1.p 128 IFDFLVDIVPRDEIK 142
                          ************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.35E-3411132IPR009072Histone-fold
Gene3DG3DSA:1.10.20.105.1E-3752124IPR009072Histone-fold
PfamPF008081.9E-2060123IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDSHHQQQQV GQQPPPPAPG VGAPAPFHHQ LQQQQQQQLQ MFWAYQRQEI EQVSDFKNHQ  60
LPLARIKKIM KADEDVRMIS AEAPILFSKA CELFILELTI RSWLHAEENK RRTLQKNDIA  120
AAITRTDIFD FLVDIVPRDE IKEEVGIAGL VGGTVPFYYP AMGQPAGMMM GRPVGDPAGG  180
GYLAPPSQAW QSVWQTAGAD EGAYGSGGGN GGPQQGNVDG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C1e-43211381119HapE
4g91_C1e-43211381119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467975.11e-104PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1
SwissprotQ9FMV57e-92NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA0A0D2LVC81e-104A0A0D2LVC8_G
STRINGGLYMA06G17780.14e-98(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.25e-81nuclear factor Y, subunit C4